Evaluating Pulses and Modified Fed-batch Feeding of Methanol to Increase Expression Level of Human Insulin Precursor in Pichia Pastoris High-Density Cultivation

Eko Wahyu Putro, Dini Nurdiani, - Hariyatun, Nuruliawaty Utami, Wien Kusharyoto, Ario Betha Juanssilfero, Rozy Ayu Silvia

Abstract


Production of sufficient insulin at a more affordable price is necessary. The increase in the number of people living with diabetes puts more burden on healthcare and the economy. P. pastoris is a promising host to produce human insulin precursors at a high yield in minimal medium and secretes low levels of endogenous protein impurities. Production of the precursor involves several parameters, including glycerol concentration, culture density, methanol concentration, and medium composition. This study evaluated the effect of those parameters on protein expression in the flask culture. Subsequently, fermentation in the bioreactor was carried on according to the information obtained from flask culture. Methanol feeding to induce protein expression was undertaken by pulses and fed-batch modes. The fed-batch method was modified from a standard technique by incorporating constant flow rates with variable feed concentrations. Cell density was determined based on optical density measurement at 600 nm and dry cell weight. Tricine SDS-PAGE and reversed-phase HPLC conducted protein analysis. The pulse feeding produced higher precursor concentrations at ~445 mg/L than modified fed-batch feeding at ~267 mg/L. However, the modified fed-batch feeding can be an alternative to producing human insulin precursors when a standard fed-batch feeding with variable flow rates and 100% (v/v) methanol feed is difficult to apply.

Keywords


Diabetes; human insulin precursor; Pichia pastoris; bioreactor; fed-batch.

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References


P. Saeedi et al., “Global and regional diabetes prevalence estimates for 2019 and projections for 2030 and 2045: Results from the International Diabetes Federation Diabetes Atlas, 9th edition,†Diabetes Res. Clin. Pract., vol. 157, p. 107843, Nov. 2019, doi: 10.1016/j.diabres.2019.107843.

C. Bommer et al., “Global Economic Burden of Diabetes in Adults: Projections From 2015 to 2030.,†Diabetes Care, vol. 41, no. 5, pp. 963–970, May 2018, doi: 10.2337/dc17-1962.

M. C. Lawrence, “Understanding insulin and its receptor from their three-dimensional structure,†Mol. Metab., p. 101255, May 2021, doi: 10.1016/j.molmet.2021.101255.

C. Gurramkonda et al., “Application of simple fed-batch technique to high-level secretory production of insulin precursor using Pichia pastoris with subsequent purification and conversion to human insulin.,†Microb. Cell Fact., vol. 9, no. 31, pp. 1–11, May 2010, doi: 10.1186/1475-2859-9-31.

M. Zieliński et al., “Expression and purification of recombinant human insulin from E. coli 20 strain,†Protein Expr. Purif., vol. 157, pp. 63–69, 2019, doi: https://doi.org/10.1016/j.pep.2019.02.002.

E. J. Thak, S. J. Yoo, H. Y. Moon, and H. A. Kang, “Yeast synthetic biology for designed cell factories producing secretory recombinant proteins,†FEMS Yeast Res., vol. 20, no. 2, Feb. 2020, doi: 10.1093/femsyr/foaa009.

J. Wu, G. Gong, S. Han, W. Zhang, Y. Hu, and L. Xie, “Expression, purification, and characterization of the Degludec precursor DesB30,†Protein Expr. Purif., vol. 161, pp. 28–39, 2019, doi: https://doi.org/10.1016/j.pep.2019.04.010.

R. J. Zahrl, D. A. Peña, D. Mattanovich, and B. Gasser, “Systems biotechnology for protein production in Pichia pastoris,†FEMS Yeast Res., vol. 17, no. 7, p. 68, Nov. 2017, doi: 10.1093/femsyr/fox068.

A.-M. Tran et al., “Pichia pastoris versus Saccharomyces cerevisiae: a case study on the recombinant production of human granulocyte-macrophage colony-stimulating factor,†BMC Res. Notes, vol. 10, no. 1, p. 148, Apr. 2017, doi: 10.1186/s13104-017-2471-6.

K. Markošová, L. Weignerová, M. Rosenberg, V. Křen, and M. Rebroš, “Upscale of recombinant α-L-rhamnosidase production by Pichia pastoris Mut(S) strain,†Front. Microbiol., vol. 6, p. 1140, Oct. 2015, doi: 10.3389/fmicb.2015.01140.

V. Looser, D. Lüthy, M. Straumann, K. Hecht, K. Melzoch, and K. Kovar, “Effects of glycerol supply and specific growth rate on methanol-free production of CALB by P. pastoris: functional characterisation of a novel promoter,†Appl. Microbiol. Biotechnol., vol. 101, no. 8, pp. 3163–3176, Apr. 2017, doi: 10.1007/s00253-017-8123-x.

X. Shi, T. Karkut, M. Chamankhah, M. Alting-Mees, S. M. Hemmingsen, and D. Hegedus, “Optimal conditions for the expression of a single-chain antibody (scFv) gene in Pichia pastoris,†Protein Expr. Purif., vol. 28, no. 2, pp. 321–330, Apr. 2003, doi: 10.1016/S1046-5928(02)00706-4.

A. A. Prabhu, V. D. Veeranki, and S. J. Dsilva, “Improving the production of human interferon gamma (hIFN-γ) in Pichia pastoris cell factory: An approach of cell level,†Process Biochem., vol. 51, no. 6, pp. 709–718, 2016, doi: https://doi.org/10.1016/j.procbio.2016.02.007.

M. Anggiani, I. Helianti, and A. Abinawanto, “Optimization of methanol induction for expression of synthetic gene Thermomyces lanuginosus lipase in Pichia pastoris,†in AIP Conference Proceedings, Oct. 2018, vol. 2023, no. 1, p. 20170, doi: 10.1063/1.5064154.

L. Jia, Z. Shi, J. Yan, J. Ding, and Q. Hua, “Enhancing heterologous proteins production by MutS Pichia pastoris via periodic methanol induction control,†AIChE J., vol. 66, no. 1, p. e16798, Jan. 2020, doi: 10.1002/aic.16798.

C. Dietzsch, O. Spadiut, and C. Herwig, “A fast approach to determine a fed batch feeding profile for recombinant Pichia pastoris strains,†Microb. Cell Fact., vol. 10, Oct. 2011, doi: 10.1186/1475-2859-10-85.

S. Katla, N. Mohan, S. S. Pavan, U. Pal, and S. Sivaprakasam, “Control of specific growth rate for the enhanced production of human interferon α2b in glycoengineered Pichia pastoris: process analytical technology guided approach,†J. Chem. Technol. Biotechnol., vol. 94, no. 10, pp. 3111–3123, Oct. 2019, doi: 10.1002/jctb.6118.

S. Polez et al., “A Simplified and Efficient Process for Insulin Production in Pichia pastoris.,†PLoS One, vol. 11, no. 12, p. e0167207, 2016, doi: 10.1371/journal.pone.0167207.

W.-C. Liu, S. Inwood, T. Gong, A. Sharma, L.-Y. Yu, and P. Zhu, “Fed-batch high-cell-density fermentation strategies for Pichia pastoris growth and production.,†Crit. Rev. Biotechnol., vol. 39, no. 2, pp. 258–271, Mar. 2019, doi: 10.1080/07388551.2018.1554620.

J. Zhang, Y. Zhao, M. Li, and T. Liu, “Optimization of defined medium for recombinant Komagataella phaffii expressing cyclodextrin glycosyltransferase,†Biotechnol. Prog., vol. 35, no. 5, p. e2867, Sep. 2019, doi: 10.1002/btpr.2867.

A. A. Prabhu, B. Mandal, and V. V. Dasu, “Medium optimization for high yield production of extracellular human interferon-γ from Pichia pastoris: A statistical optimization and neural network-based approach,†Korean J. Chem. Eng., vol. 34, no. 4, pp. 1109–1121, Apr. 2017, doi: 10.1007/s11814-016-0358-1.

D. Nurdiani, Hariyatun, N. Utami, E. Wahyu Putro, and W. Kusharyoto, “Selecting Pichia pastoris recombinant clones for higher secretion of human insulin precursor into the culture supernatant,†in IOP Conference Series: Earth and Environmental Science, Feb. 2020, vol. 439, no. 1, p. 12017, doi: 10.1088/1755-1315/439/1/012017.

D. Nurdiani, Hariyatun, and W. Kusharyoto, “Secretory expression of human insulin precursor in Pichia pastoris employing truncated alpha-factor leader sequence and a short C-peptide,†Indones. J. Biotechnol., vol. 23, no. 2, pp. 102–108, 2018, doi: 10.22146/ijbiotech.38958.

G. Gallo-Oller, R. Ordoñez, and J. Dotor, “A new background subtraction method for Western blot densitometry band quantification through image analysis software,†Journal of Immunological Methods, vol. 457. Elsevier B.V., pp. 1–5, Jun. 01, 2018, doi: 10.1016/j.jim.2018.03.004.

A. Türkanoğlu Özçelik, S. Yılmaz, and M. Inan, “Pichia pastoris promoters,†in Methods in Molecular Biology, vol. 1923, Humana Press Inc., 2019, pp. 97–112.

X. Li et al., “Transcriptional analysis of impacts of glycerol transporter 1 on methanol and glycerol metabolism in Pichia pastoris,†FEMS Yeast Res., vol. 18, no. 1, p. 81, Feb. 2018, doi: 10.1093/femsyr/fox081.

M. Karbalaei, S. A. Rezaee, and H. Farsiani, “Pichia pastoris: A highly successful expression system for optimal synthesis of heterologous proteins,†Journal of Cellular Physiology, vol. 235, no. 9. Wiley-Liss Inc., pp. 5867–5881, Sep. 01, 2020, doi: 10.1002/jcp.29583.

C. B. Matthews, A. Kuo, K. R. Love, and J. C. Love, “Development of a general defined medium for Pichia pastoris,†Biotechnol. Bioeng., vol. 115, no. 1, pp. 103–113, Jan. 2018, doi: 10.1002/bit.26440.

A. Pekarsky, S. Mihalyi, M. Weiss, A. Limbeck, and O. Spadiut, “Depletion of boric acid and cobalt from cultivation media: Impact on recombinant protein production with Komagataella phaffii,†Bioengineering, vol. 7, no. 4, pp. 1–24, Dec. 2020, doi: 10.3390/bioengineering7040161.

W. Zhu, R. Xu, G. Gong, L. Xu, Y. Hu, and L. Xie, “Medium optimization for high yield production of human serum albumin in Pichia pastoris and its efficient purification,†Protein Expr. Purif., vol. 181, p. 105831, May 2021, doi: 10.1016/j.pep.2021.105831.

A. B. Zepeda, A. Pessoa, and J. G. Farías, “Carbon metabolism influenced for promoters and temperature used in the heterologous protein production using Pichia pastoris yeast,†Brazilian J. Microbiol., vol. 49, pp. 119–127, Nov. 2018, doi: 10.1016/j.bjm.2018.03.010.

X. Garcia-Ortega, N. Adelantado, P. Ferrer, J. L. Montesinos, and F. Valero, “A step forward to improve recombinant protein production in Pichia pastoris: From specific growth rate effect on protein secretion to carbon-starving conditions as advanced strategy,†Process Biochem., vol. 51, no. 6, pp. 681–691, 2016, doi: https://doi.org/10.1016/j.procbio.2016.02.018.

C. Canales, C. Altamirano, and J. Berrios, “The growth of Pichia pastoris Mut+ on methanol–glycerol mixtures fits to interactive dual-limited kinetics: model development and application to optimised fed-batch operation for heterologous protein production,†Bioprocess Biosyst. Eng., vol. 41, no. 12, pp. 1827–1838, Dec. 2018, doi: 10.1007/s00449-018-2005-1.

D. A. Peña, B. Gasser, J. Zanghellini, M. G. Steiger, and D. Mattanovich, “Metabolic engineering of Pichia pastoris,†Metabolic Engineering, vol. 50. Academic Press Inc., pp. 2–15, Nov. 01, 2018, doi: 10.1016/j.ymben.2018.04.017.

L. D. Picotto, G. H. Sguazza, M. A. Tizzano, C. M. Galosi, S. F. Cavalitto, and M. R. Pecoraro, “An effective and simplified DO-stat control strategy for production of rabies glycoprotein in Pichia pastoris,†Protein Expr. Purif., vol. 132, pp. 124–130, Apr. 2017, doi: 10.1016/j.pep.2017.02.004.




DOI: http://dx.doi.org/10.18517/ijaseit.12.3.15109

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